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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015951335.1_cds_XP_016491388.1_81706
CDS Infomation

[gene=LOC107811053] [db_xref=GeneID:107811053] [protein=probable pectate lyase 8] [protein_id=XP_016491388.1] [location=join(1251..1327,1498..1551,1736..1810,5693..5863,5975..6446,6541..6644,6877..7015,7138..7359)] [gbkey=CDS]
Sequence

ATGGCAACTGCTCTGTATTTTCTTTGTCCATTGCTAATTATGATGATGCTTTTCATCACT
GCCACAGCCAATAAAAGTATTGAAGAAGCAAAGCAATTTCAGAGCTTAAGTAGCTCGACT
CTGGCGAACAGGTTAAGTGAAAATGATGAACTCAGGCATGAACATGCTGAAGATGATCCA
GAAGCTATCGCTTCTATGGTGGCTATGAGCATTAGGAATAGCACAGAGAGGAGGAAATTG
GGTTACTTCTCATGTACAACGGGAAATCCTATTGATGACTGCTGGCGTTGTGATCGCCAT
TGGGTGCGTAACCGCAAACGCTTAGCTGACTGTTCTATTGGCTTTGGTCGAAATGCCATT
GGTGGTCGTGATGGAAGGTATTATGTTGTGACTGACTCAGGTGATGACGATCCAGTAAAT
CCCCGACCTGGAACACTTCGTCATGCAGTAATTCAAGACGCACCATTATGGATAGTGTTT
AAACATGATATGGTCATCACACTTAAGCAAGAACTTATGATGAACAGTTTCAAGACAATT
GATGCTCGTGGTGTGAATGTACAAATTGCATATGGGGCTTGTATTACTATCCAATTTGTT
ACTAATATTATTATTCATGGTCTTCATATTCATGACTGTAAACCCACTGGTAATGCCATG
GTCCGAAACTCACCATCACACTATGGTTGGAGGACAATGGCTGATGGTGATGGCATTTCC
ATTTTCGGTTCGAGCCATATTTGGATTGACCACAACTCTCTTTCTAATTGTGCTGATGGT
CTCATTGATGCTATCATGGGTTCAACTGCAATTACCATTTCAAACAATTACTTTACACAT
CACAATGAGGTGATTTTATTGGGGCACAGCGACTCCTATATTAGAGATAAGGTTATGCAA
GTGACGATTGCCTTCAACCATTTTGGTGAGGGTCTGATCCAGAGAATGCCAAGATGTAGG
CATGGTTATTTCCATGTGGTGAACAATGACTATACACACTGGGAAATGTATGCCATTGGT
GGTAGTGCTGATCCTACAATTAACAGCCAGGGCAACAGATACCTTGCCCCAGTGAACCCT
TTTGCCAAAGAGGTGACGAAAAGAGTGGAACCATGGGAAGGATCATGGAAGCACTGGAAC
TGGAGATCAGAAGGAGACCTTATGCTGAATGGAGCATACTTTACTGCGTCTGGACGTGCC
GCTCCACGCAGTTATGCAAGAGCCTCAAGCTTAGCTGCTAAGTCCTCTTCTATGGTGGGA
ACTATTACCTCAAATGCTGGTGCACTTTCTTGTCACATAGGCTACCAATGTTGA

Peptide Sequence

PEP ID

XP_016491388.1
PEP Infomation

PREDICTED: probable pectate lyase 8 [Nicotiana tabacum]
Sequence

MATALYFLCPLLIMMMLFITATANKSIEEAKQFQSLSSSTLANRLSENDELRHEHAEDDP
EAIASMVAMSIRNSTERRKLGYFSCTTGNPIDDCWRCDRHWVRNRKRLADCSIGFGRNAI
GGRDGRYYVVTDSGDDDPVNPRPGTLRHAVIQDAPLWIVFKHDMVITLKQELMMNSFKTI
DARGVNVQIAYGACITIQFVTNIIIHGLHIHDCKPTGNAMVRNSPSHYGWRTMADGDGIS
IFGSSHIWIDHNSLSNCADGLIDAIMGSTAITISNNYFTHHNEVILLGHSDSYIRDKVMQ
VTIAFNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRYLAPVNP
FAKEVTKRVEPWEGSWKHWNWRSEGDLMLNGAYFTASGRAAPRSYARASSLAAKSSSMVG
TITSNAGALSCHIGYQC

Transcript Sequence

Gene sequence data has not been registered.